321. Graphene Oxide Enhances Drought Tolerance in Apple by Promoting ROS Scavenging and Regulating Amino Acid Contents.
作者: Pengda Cheng.;Jingyu Zhang.;Wanshan Du.;Xinyue Yang.;Yutian Zhang.;Zhiyu Zheng.;Arij Khalil.;Xiaogang Han.;Chundong Niu.;Fengwang Ma.;Qingmei Guan.
来源: Physiol Plant. 2026年178卷2期e70817页
Graphene oxide (GO), a two-dimensional nanomaterial, has shown potential for improving plant stress tolerance. However, its involvement in, and mechanism of, regulating the drought stress response in apple plants remains unclear. In this study, we investigated the effects of GO on drought tolerance of M9-T337 plants under both short-term and long-term drought conditions. Results revealed that under short-term drought conditions, 0.1 and 1 mg L-1 GO significantly alleviated drought-induced damage by reducing electrolytic leakage and MDA contents, while enhancing antioxidant enzyme activities and ROS scavenging. Under long-term drought conditions, 0.1 and 1 mg L-1 GO improved photosynthetic rate and promoted root system development, thereby enhancing plant drought tolerance. Additionally, in M9-T337 plants, GO elevated the levels of γ-aminobutyric acid, proline, phenylalanine, arginine, and histidine, and upregulated the expression of MdCAT2, MdPOD2, MdDREB2A, MdERF1, and MdABI1. Taken together, this study connects GO with drought tolerance in apple plants, providing evidence that GO effectively enhances the drought tolerance of M9-T337 plants. These findings offer a promising strategy for the sustainable cultivation of apple in water-scarce regions through the application of nanomaterials.
322. HIV Infection as an Independent Factor Accelerating Epigenetic Ageing in Men Treated with Integrase Inhibitors: A Case-Control Study.
作者: Mateusz Bożejko.;Małgorzata Małodobra-Mazur.;Andrzej Gnatowski.;Monika Ołdakowska.;Aleksandra Szymczak.;Bartosz Szetela.;Hubert Ciepłucha.;Aleksander Zińczuk.;Brygida Knysz.
来源: Viruses. 2026年18卷2期
A number of published studies suggest that HIV infection accelerates epigenetic ageing. The main aim of this study was to ascertain if HIV infection is an independent factor leading to DNA hypomethylation and accelerating epigenetic ageing in men successfully treated with integrase inhibitor (INSTI)-based combined antiretroviral therapy (cART). Forty-eight (48) men living with HIV receiving INSTI-based cART and fifty (50) uninfected men in the control group were included. All participants filled out a questionnaire probing into lifestyle factors. Global and site-specific DNA methylation and expression of methyltransferase genes were examined in all participants. As well, all patients underwent basic laboratory blood tests. The results were analysed using statistical and machine learning methods. We found a strong association between HIV infection and global DNA hypomethylation as well as significant association with higher expression of the methyltransferase gene DNMT1. However, there was no association with DNA methylation levels of CNOT2, DPP6, FOXG1 and NPTX2 genes or expression levels of DNMT3a and DNMT3b. The results confirm that in men successfully treated with INSTI-based cART, HIV infection is an independent factor causing global DNA hypomethylation and increased DNMT1 expression and thus accelerating epigenetic ageing.
323. GenReP: An Ensemble Model for Predicting TP53 in Response to Pharmaceutical Compounds.
TP53 is a tumor-suppressor gene involved in regulating apoptosis, DNA repair, and genomic stability. Mutations in TP53 are implicated in approximately half of all detected cancers, including breast, lung, colorectal, and ovarian cancers, making it a significant target for therapeutic interventions. Many pharmaceutical drugs aim to restore TP53 function, and there is a need for predictive tools to assess how compounds may affect TP53 expression. In this study, we propose a new ensemble machine-learning model to predict the direction of TP53 relative gene expression in response to pharmaceutical compounds. Our model utilizes molecular fingerprints, descriptors, and scaffold-based features extracted from SMILES representations of compounds concatenated into a single feature vector. Trained using our newly generated benchmark dataset based on the Connectivity Map (CMap) database and addressing class imbalance with the Synthetic Minority Over-sampling Technique (SMOTE), our model achieves 62.9%, 93.9%, 40.3%, and 0.39 in terms of accuracy, sensitivity, specificity, and Matthews Correlation Coefficient (MCC), respectively. As the first-of-its-kind TP53 gene regulation prediction, our study serves as a convincing proof-of-concept that paves the way for future investigation. GenReP as a stand-alone predictor, its source code, and our newly generated benchmark dataset are publicly available.
324. m6A RNA Methylation Is Increased in Tumour Invasive Regions and Influences Invasive Capability and Chemotherapeutic Sensitivity in Adult Glioblastoma.
作者: Masar Radhi.;Jonathan Rowlinson.;Lauryn Walker.;Simon Deacon.;Helen Miranda Knight.;Stuart Smith.
来源: Int J Mol Sci. 2026年27卷4期
Adult glioblastoma multiforme (GBM) is the most common primary malignant brain tumour caused by multiple molecular factors. N6-methyl-adenosine (m6A) is an abundant RNA modification that governs cellular RNA metabolism. We hypothesise that changes in m6A-modified RNA and regulatory machinery such as the writer proteins, Methyltransferase 3 (METTL3) and WT1-associating protein (WTAP), the demethyltransferase protein, and Alpha-ketoglutarate dependent dioxygenase (FTO), are driving factors of GBM development and treatment resistance. Here, we investigated m6A-RNA spatial and quantitative abundance and expression of m6A effector proteins directly in GBM tissue and patient-derived low-passage primary adult GBM and low-grade glioma (LGG) cells, and explored the consequences of m6A-RNA disruption on GBM invasive capabilities, self-renewal and responsiveness to temozolomide (TMZ). We observed that METTL3, WTAP and FTO transcript and protein expression were significantly increased in cells derived from invasive regions of GBM tumours, and elevated WTAP and FTO expression significantly correlated with poor GBM patient survival. We further found that the abundance of m6A-modified RNA in GBM tumours was significant higher in rim and invasive tissue, as well as significantly higher in patient-derived cells from GBM tumour invasive regions. Functional depletion of these effector proteins significantly altered m6A levels on and the expression of the pluripotency stem cell marker SOX2 while also impairing self-renewal and cell invasion behaviour and increasing sensitivity to TMZ. The targeting of RNA modification regulatory mechanisms reveals novel therapeutic strategies aimed at improving clinical outcomes for GBM patients.
325. Androgen Signaling Represses Homeobox C9, an Inhibitor of Androgen Receptor, in Prostate Cancer Cells.
作者: Takao Susa.;Eiki Tsuboi.;Tomoko Okada.;Miho Akimoto.;Noriyuki Okudaira.;Hiroko Okinaga.;Masayoshi Iizuka.;Tomoki Okazaki.;Mimi Tamamori-Adachi.
来源: Int J Mol Sci. 2026年27卷4期
Because prostate cancer proliferates in an androgen-dependent manner, various inhibitors of androgen production and antagonists of the androgen receptor (AR) are used as therapeutic agents. However, the emergence of castration-resistant prostate cancer has prompted the development of additional treatment strategies. In this study, we focused on the antiprostate cancer effects of vitamin D3 and examined novel antiproliferative effects through the crosstalk with androgen signaling. In human prostate cancer LNCaP cells, homeobox C9 (HOXC9) was identified as a common regulated target gene by dihydroxytestosterone and 1α,25-dihydroxyvitamin D3, but in opposite directions. Ligand-stimulated AR and vitamin D receptor competitively shared binding sites in the HOXC9 regulatory region, but dihydroxytestosterone stimulation preferentially suppressed HOXC9 expression due to the stronger binding properties of AR and the induction of DNA methylation. Forced expression of HOXC9 inhibited androgen signaling to eliminate the androgen-dependent proliferation by associating with the AR transcription complex, in part due to interference with AR binding to some of its targets in LNCaP cells. In summary, this study provides evidence for the involvement of HOXC9 in antiproliferative effects through a regulatory mechanism mediated by a crosstalk between vitamin D receptor and AR.
326. Lavender Essential Oil-Induced Enhancement of Exercise-Responsive Myokine Expression and Alteration of Muscle-Related Gene Networks in an in Vitro Muscle Contraction Model.
作者: Fumiko Takenoya.;Junko Shibato.;Michio Yamashita.;Makoto Kanzaki.;Yasuhiro Yamazaki.;Yoshihiko Chiba.;Takahiro Hirabayashi.;Seiji Shioda.;Randeep Rakwal.
来源: Int J Mol Sci. 2026年27卷4期
Lavender essential oil (LEO) is commonly used in aromatherapy for stress reduction, relaxation and recovery from (muscle) fatigue. However, molecular mechanisms underlying its potential physiological effects on the skeletal muscle remain unclear. This study investigates whether LEO affects the intracellular signaling pathways in skeletal muscle cells that respond to physical activity. Prior to the experiment, GC-MS analysis confirmed linalyl acetate and linalool as the main components of LEO used in this study. Transdermal permeability was assessed using a reconstructed human epidermis model, which showed that linalool permeated the epidermal layer, while linalyl acetate showed minimal permeation. Following this confirmation, the differentiated C2C12 myotubes were treated with LEO in an in vitro muscle contraction model using electrical pulse stimulation (EPS). LEO significantly increased Interleukin 6 (IL-6) mRNA expression under EPS, and DNA whole-genome microarray analysis showed that LEO induced different gene expression profiles depending on the contraction state of the muscle cells. These results provide the first molecular evidence that LEO modulates skeletal muscle gene networks in a stimulation-dependent manner and may indicate its potential use as an aid to recovery (from fatigue) after exercise. Notably, the skin permeation of LEO components showed a saturation trend at concentrations above 5%, suggesting the presence of an optimal concentration range for topical application in sports aromatherapy.
327. A Genome-Wide DNA Methylation Survey Reveals Salicylic Acid-Induced Distinct Hypomethylation Linked to Defense Responses Against Biotrophic Pathogens.
作者: Theoni Margaritopoulou.;Spyros Foutadakis.;Giannis Vatsellas.;Martina Samiotaki.;Emilia Markellou.
来源: Int J Mol Sci. 2026年27卷4期
DNA methylation is a conserved regulatory mechanism of gene expression, genome stability, and development, and is highly associated with the effective induction of defense responses for plant priming. In the Green Deal era, the use of plant defense inducers (PDIs), compounds that activate defense and prime plants against imminent pathogen attacks, is a safe and environmentally sustainable approach to support plants against pathogens. Though efforts have succeeded at deciphering part of the mode of action of PDIs, more information is needed to understand the underlying pathways of their effectiveness. Here, salicylic acid (SA), loaded in chitosan nanoparticles, increased hypomethylation by more than 25% for 56 genomic regions that corresponded to defense-related genes, such as pectin lyases, defensins and leucine-rich repeat transmembrane protein kinases against the biotrophic fungal pathogen Podosphaera xanthii. A genomic region of the promoter of SKP1A, which is a core member of the SCF E3 ubiquitin ligase complex, was found to be a differentially methylated region (DMR), with 60% hypomethylation, both after PDI application and pathogen inoculation, possibly indicating a similar activation mechanism. Examination of this DMR revealed the presence of SA-, auxin-, and defense-related cis-elements. Investigation of the proteins associated with the above cis-elements showed significant upregulation in expression after PDI. Moreover, association of the identified DMR with transcriptomics showed enrichment of the SA pathway. Overall, these findings shed light on the epigenetic mechanisms that underlie SA-related defense priming in plants.
328. Exogenous Hydrogen Sulfide Enhances Photosynthesis Under Thiocyanate Stress by Regulating Rubisco Energy Metabolism and Activation in Rice Seedlings.
作者: Hui-Ling Chen.;Yu-Xi Feng.;Yu-Juan Lin.;Meng-Hua Chen.;Yan-Hong Li.;Yan-Peng Liang.
来源: Int J Mol Sci. 2026年27卷4期
Thiocyanate (SCN-), a persistent inorganic contaminant widely present in industrial wastewater, poses severe risks to plant growth and photosynthesis. Hydrogen sulfide (H2S) is an emerging gaseous signaling molecule involved in the regulation of plant stress responses; however, its role in modulating Rubisco energy metabolism and activation under SCN- stress remains unclear. Here, we investigated the effects of exogenous H2S on magnesium homeostasis, ATP/NADPH metabolism, Rubisco activation, and photosynthetic performance in rice seedlings exposed to SCN- stress via physiological, biochemical, and transcriptional approaches. We found that exogenous H2S significantly increased Mg2+ accumulation, enhanced H+-ATPase and Mg2+-ATPase activities, and promoted Rubisco activase (RCA) abundance and activity. These changes were accompanied by reduced steady-state ATP and NADPH contents, indicating that increased energy consumption was driven by accelerated Calvin cycle turnover. At the transcriptional level, H2S regulated key genes involved in ATP hydrolysis, Mg2+ transport, Rubisco activation, and chlorophyll biosynthesis. Consequently, the chlorophyll content, stomatal conductance, and transpiration rate improved under SCN- stress. Collectively, our results demonstrate that exogenous H2S enhances photosynthetic efficiency and Rubisco carboxylation capacity by coordinating Rubisco energy metabolism and activation.
329. Expression Profile of Metabotropic Glutamate Receptors in Lung Adenocarcinoma: GRM5 and Validation of Its Targeting Drug Cinchonine.
作者: Yajing Xue.;Wei Liu.;Yongfu Wang.;Pengzhuo Tao.;Yizhen Yuan.;Changmin Liu.;Shilin Chen.;Chi Song.
来源: Int J Mol Sci. 2026年27卷4期
The incidence and mortality rates of lung adenocarcinoma (LUAD) continue to rise, highlighting an urgent need for novel therapeutic targets. In this study, bioinformatics analysis revealed that members of the metabotropic glutamate receptor (mGluR) family are significantly correlated with the expression profile, prognosis, genetic mutations, and tumor immune microenvironment of LUAD, with GRM5 being the most significantly associated member. Overexpression of GRM5 has been shown to inhibit LUAD proliferation and induce apoptosis, while cinchonine (CN) treatment further enhances these effects, suggesting that CN may act as a GRM5 agonist to synergistically exert antitumor activity. Transcriptome sequencing further identified four key downstream targets and their associated signaling pathways. In summary, this study confirms that GRM5 can serve as a potential prognostic biomarker and therapeutic target for LUAD, while the small-molecule compound CN shows promise as an antitumor candidate drug targeting GRM5.
330. Pharmacological Targeting of Midkine (MDK) Reveals Stiffness-Dependent Control of Hepatocellular Carcinoma Invasiveness.
作者: Christiana Christou.;Kyriacos Agathangelou.;Nikolas Dietis.;Andreas Stylianou.;Vasiliki Gkretsi.
来源: Int J Mol Sci. 2026年27卷4期
Metastasis accounts for most cancer-related deaths and hepatocellular carcinoma (HCC) is no exception. Midkine (MDK) is a multifunctional secreted protein elevated in HCC with a vague role in HCC. In this study, we used bioinformatics to verify MDK expression in HCC tumors, and next, we inhibited the MDK protein in invasive Hep3B cells using an MDK inhibitor (iMDK) both in vitro and in vivo. Our results showed that iMDK promoted cell migration and enhanced lamellipodia formation while at the same time downregulating the expression of cell-matrix adhesion genes. In order to also consider forces exerted by the surrounding matrix, we performed cell adhesion, transwell invasion, and 3D tumor spheroid invasion assays in two different stiffness conditions. Adhesion and invasion always exhibited opposite patterns, with adhesion being inhibited in soft matrix environments, accompanied by increased invasion, and a reverse effect in stiff environments. In vivo experiments where cells pre-treated with iMDK were implanted to zebrafish embryos showed overall reduced metastasis, verifying that MDK is a central mechanotransduction regulator that enables HCC cells to adapt their metastatic strategies to ECM stiffness. Thus, MDK inhibition effectively disrupts mechanosensitive coordination during metastasis, highlighting its potential as a therapeutic target.
331. Regulatory Mechanisms of Silver Nanoparticles on Seed Germination: A Multilevel Integrative Perspective.
作者: Yawen Zheng.;Chongyuan Qin.;Peilin Han.;Yinuo Pan.;Yingxin Han.;Hengjin Chen.;Xiumei Wang.;Juanxia Li.;Jixiang Lin.;Jinghong Wang.;Lirong Zhang.
来源: Int J Mol Sci. 2026年27卷4期
With the growing global population and the challenges posed by climate change on agriculture, improving seed germination quality has become an urgent task. Nanotechnology, particularly silver nanoparticles (AgNPs), offers a promising approach to this issue. However, their long-term environmental impact and health risks require further evaluation.This review first explores the physicochemical properties of AgNPs and their effects on plant growth and seed development. Next, the review discusses the mechanisms by which AgNPs enhance seed resistance to pathogens, regulate reactive oxygen species (ROS) balance, activate key metabolic enzymes, induce metabolite accumulation, and modulate plant hormone levels. Additionally, the review explores how AgNPs influence seed gene expression, proteomic networks, and the germination microenvironment. Given the lack of field data on long-term low-dose exposure and challenges in monitoring morphological transformation, the review also evaluates the potential risks of AgNPs in agriculture. These risks include their accumulation in the food chain, environmental transformation, and long-term effects.The review aims to summarize the mechanisms by which AgNPs impact seed germination and plant growth, providing a theoretical basis for their cautious use in agricultural and horticultural practices, while considering their environmental fate and health risks.
332. Differential Gene Expression in Differentiated Human Neuroblastoma SH-SY5Y Cells in Response to a Cocktail of Monoamine Oxidase Inhibitors.
Differentiated human neuroblastoma (SH-SY5Y) cells were exposed to either 0.2 μM nicotine, a tobacco smoke preparation (TPM) diluted to the same nicotine concentration, or a cocktail of seven tobacco smoke monoamine oxidase inhibitors (MAOIs) at the concentrations measured in the TPM. Treatment occurred for 3 days, such that the cellular monoamine oxidase (MAO) concentration was reduced by approximately 50% in both the TPM and MAOI cocktail exposure groups. Changes in MAO gene expression after exposure to the different treatments were determined using qPCR, and the effect of these exposure treatments on global gene expression was also examined using mRNA sequencing. No change in MAOA and MAOB gene expression levels was observed, after any treatment, either using qPCR or mRNA sequencing. The MAOI versus control treatment comparison revealed that four genes were >2-fold down-regulated (ZNF727, RP11-310E22.4, CRYM, SEMA3F), and 19 genes were up-regulated after 3 days' exposure to the MAOI cocktail. Many of these differentially expressed genes were linked with disease conditions related to smoking and addiction. Exposure to nicotine and TPM each resulted in up- and down-regulation of different sets of genes. The results indicate that changes in MAO gene expression are unlikely to be responsible for the changes in MAO activity. The association between genes whose expression changes with tobacco MAO treatment and smoking-related diseases and addiction suggests the central role that MAO inhibition may play in mediating the effects of smoking on smokers.
333. Gene Expression-Guided Drug Repurposing in Oncology: Insights from Antiretroviral Agents in Prostate and Bladder Cancer.
Background/Objectives: Gene expression-guided drug repurposing has emerged as a strategy to identify new therapy opportunities by associating disease transcriptional signatures with drug-induced gene expression profiles. This is relevant for prostate and bladder cancers, which have high molecular heterogeneity and therapy resistance limits for their standard treatment regimens. Antiretrovirals have been of great interest as repurposed candidates for these cancers due to their various effects on cancer cell pathways. The objective of this review is to assess the principles, applications, and challenges of this approach, with emphasis on antiretrovirals. Methods: This review summarizes published literature on gene expression-based drug repurposing methodologies, including signature reversion, pathway level analysis, and validation studies. Studies applying these concepts to prostate and bladder cancer were analyzed, and evidence of antiretroviral repurposing for cancer therapy was assessed based on transcriptomic alterations, pathway perturbation, and preclinical outcomes. Results: Transcriptomic-driven studies identified several drug candidates capable of modulating gene expression associated with therapy resistance, tumor progression, and cell stress responses. The anticancer effects of antiretrovirals were shown to be related to cell cycle arrest, apoptosis, metabolic alterations, and proteostasis. Nonetheless, transcriptomic responses are highly context-dependent and can be influenced by tumor subtype and experiment and treatment conditions. Off-target effects can also complicate mechanism interpretation. Conclusions: Gene expression-guided drug repurposing enables the systematic prioritization of clinically actionable candidates by matching disease and drug transcriptional signatures, but successful translation will require the integration of other omics results, careful model selection, and the development of clinically relevant biomarkers to support mechanism-informed repurposing. Translation will depend on subtype-aware signature matching, integration with complementary omics, and biomarker-backed validation to support precision deployment.
334. An Integrated Analysis of circRNA and lncRNA Expression of Bovine Granulosa Cells Induced by Melatonin Reveals the Pathways Potentially Involved in Follicular Development.
作者: Shujuan Wang.;Shiji Zhu.;Yukang Wu.;Yuhao Zhang.;Dengxu Zhu.;Huiyu Wang.;Wenju Liu.
来源: Genes (Basel). 2026年17卷2期
Objective: Accumulating evidence demonstrates that melatonin is involved in modulating granulosa cell function and follicular development. lncRNAs (long non-coding RNAs) and circRNAs (circular RNAs) have been reported to participate in multiple biological processes. This study aimed to explore the candidate circRNAs and lncRNAs related to molecular mechanisms when exploring the role of melatonin in regulating ovarian function. Methods: Bovine ovary granulosa cells were collected 48 h after treatment with melatonin at 10-7 M. The lncRNA and circRNA profiles of bovine granulosa cells were further explored using high-throughput sequencing in the absence/presence of melatonin. The differentially expressed lncRNAs and circRNAs were analyzed through the annotation information of source transcripts for GO (Gene Ontology) and KEGG (Kyoto Encyclopedia of Genes and Genomes). Results: We identified 99 differentially expressed lncRNAs and 28 differentially expressed circRNAs. Enrichment analysis of differentially expressed lncRNAs and circRNAs showed they were enriched in multiple pathways involved in development, apoptosis, and reproductive function, such as the mTOR (mammalian Target of Rapamycin) signaling pathway, FoxO (Forkhead box O) signaling pathway, MAPK (Mitogen-Activated Protein Kinase) signaling pathway, Hippo signaling pathway, TGF-beta (Transforming Growth Factor-β) signaling pathway, PI3K-Akt (Phosphatidylinositol 3-Kinase-Akt) signaling pathway, apoptosis, and Rap1 (Ras-related protein 1), most of which were mainly related to granulosa cell function and the crosstalk between granulosa cells and oocytes. The present analysis indicated the potential role of melatonin in granulosa cell function by regulating lncRNA and circRNA expression and, thus, mediating follicular development. An lncRNA/circRNA and miRNA regulatory network was also constructed to take their interactions into account. Conclusions: Our study offers details of lncRNA and circRNA expression in bovine granulosa cells and further provides insight into the potential role of melatonin in regulating reproduction by modulating lncRNA and circRNA expression.
335. Nuclear and Mitochondrial Epigenetic Mechanisms Underlying Neurodegeneration and Gut-Brain Axis Dysregulation Induced by Micro- and Nanoplastics.
作者: Dragica Pavlovic.;Dragana Papic.;Vladimir Janjic.;Marina Mitrovic.;Milica Dimitrijevic Stojanovic.;Marina Gazdic Jankovic.
来源: Genes (Basel). 2026年17卷2期
The increasing and global distribution of microplastics and nanoplastics (MPs/NPs) in the environment has led to concern about their potential influence on human health, especially on the gastrointestinal tract, as well as the brain. MPs/NPs could traverse epithelial and endothelial barriers, disrupt the gut microbiota, and perturb the microbiota-gut-brain axis, leading to systemic inflammation and possibly extending neurodegenerative processes. Experimental models now demonstrate that MPs/NPs reprogram nuclear and mitochondrial epigenetics-DNA methylation, histone modifications, non-coding RNAs, and mitochondrial DNA regulation-in gut, immune, and neural cells with downstream effects on synaptic function, neuronal survival, and protein aggregation. This mechanistic narrative review integrates preclinical and emerging human evidence of how MPs/NPs compromise intestinal barrier integrity, modulate gut microbiota composition, affect the blood-brain barrier, and converge on oxidative stress, neuroinflammatory signaling, and cell death pathways within the central nervous system across key neurodegenerative diseases. Overall, the review offers an integrated model in which environmental exposure to chronic MPs/NPs disrupts the microbiota-gut-brain axis and drives concurrent nuclear and mitochondrial epigenetic remodeling, lowering the threshold for neurodegeneration in susceptible individuals, while outlining candidate mechanistic readouts that require exposure-specific validation in human-relevant models and longitudinal cohorts.
336. Long-Read Isoform Sequencing Reveals Aroclor1260-Induced Isoform Usage in Mouse Livers.
作者: Belinda J Petri.;Kellianne M Piell.;Banrida Wahlang.;Julia H Chariker.;Eric C Rouchka.;Matthew C Cave.;Carolyn M Klinge.
来源: Genes (Basel). 2026年17卷2期
Background/Objectives: Long-term exposure to polychlorinated biphenyls (PCBs), including the mixture of PCBs in Aroclor1260 (Ar1260), results in metabolic dysfunction-associated steatotic liver disease (MASLD) in mice and humans. While the effects of PCBs on gene expression are well-documented using short-read RNA sequencing, the regulatory roles of alternative splicing (AS) and differential transcript usage (DTU) are uncharacterized. AS has been implicated in MASLD. Previously, we reported that chronic (34 wks.) exposure of normal, low-fat-diet (LFD)-fed male mice to Ar1260 resulted in 12 hepatic RNA modifications. Proteomic analysis of these same liver samples identified Ar1260 exposure-associated changes in selenoproteins: GPX4 and SELENBP2 were increased and SELENOS and SELENOF were reduced. Methods: Here we used long-read isoform sequencing (IsoSeq) to identify DTU in four genes in the Ar1260-exposed livers: Adpgk, Blvra, Mup2, and Ndufaf6. Results: Network analysis of the corresponding proteins revealed a strong association with pathways relevant to MASLD including lipid metabolism, glycolysis, and oxidative stress. Conclusions: These findings suggest that PCB exposure alters the transcript isoform landscape of key metabolic genes involved in MASLD.
337. Proteasome Inhibition Amplifies Endoplasmic Reticulum (ER) Stress Responses: Comparative Proteomics of Chinese Hamster Ovary Cell Lines.
作者: Christiana-Kondylo Sideri.;David Ryan.;Michael Henry.;Esen Efeoglu.;Paula Meleady.
来源: Biomolecules. 2026年16卷2期
Chinese hamster ovary (CHO) cells are widely utilised in the biopharmaceutical industry to produce therapeutic proteins. Understanding the mechanisms of endoplasmic reticulum (ER) stress and its interplay with protein degradation pathways remains pivotal for improving production efficiency and product quality. In this study, we investigated the proteomic responses of CHO-K1 (non-producer), CHO DP-12 (IgG-producer), and NISTCHO (IgG-producer) cell lines under ER stress induced by a combination of the proteasome inhibitor MG132 and the glycosylation inhibitor tunicamycin. Viability, cell growth, and IgG titre were measured after 24 h, 48 h, and 72 h of treatment and the 48 h timepoint was used for the comparative analysis of the proteomic data across the three cell lines. Proteasome inhibition with MG132 intensified ER stress and altered ER-associated protein degradation (ERAD). Combined tunicamycin + MG132 treatment was associated with cell line-specific proteomic changes: NISTCHO upregulated ER translocation and glycoprotein quality control proteins (SSR4, SEC24C, UGGT1), CHO DP-12 activated redox/disulfide regulators (DNAJC10, CAPN1), while CHO-K1 showed broad proteome shifts, suggesting differences in baseline stress handling. These findings provide mechanistic insights into ER stress and protein quality control in CHO cells, offering a foundation for strategies to enhance cell line robustness and optimise biopharmaceutical production.
338. Tyrosine-Peptide Analog Modulates Extracellular Vesicles miRNAs Cargo from Mesenchymal Stem/Stromal and Cancer Cells to Drive Immunoregeneration and Tumor Suppression.
作者: Michelle B R G Ley.;Karina Galoian.;Daniel A Martinez.;Arianna Patel.;Reanna Thomas.;Tressa R Parker.;Lee Friedman.;Allie L Andryski.;Francis J Hornicek.;Thomas M Best.;Dimitrios Kouroupis.
来源: Biomolecules. 2026年16卷2期
Soft tissue sarcoma remains challenging to treat due to its heterogeneity, stemness-associated survival programs, and resistance to conventional therapies. Extracellular vesicles (EVs) mediate tumor-stroma communication, yet how stemness-targeted therapies reshape EVs-associated miRNAs networks remains unclear. This study profiled EVs miRNAs cargo from infrapatellar fat pad mesenchymal stem/stromal cells (IFP-MSCs) and sarcoma cells (SCs) under basal conditions and following treatment with a synthetic tyrosine peptide analog (TPA). EVs were isolated, characterized, and subjected to miRNAs profiling and pathway enrichment analyses. TPA induced ≥2-fold regulation of 182 miRNAs, including 49 upregulated and 24 downregulated in IFP-MSC-EVs and 86 upregulated and 23 downregulated in SC-EVs. A conserved core of 149 miRNAs (67.1%) was shared across all EVs groups. Abundant species included miR-3960 and miR-21-5p, while TPA reduced tumor-associated miRNAs such as miR-1246 (~10-fold decrease in IFP-MSC-EVs). Pathway enrichment revealed consistent targeting of cancer, MAPK, Wnt, TGF-β, and immune signaling pathways, with modest increases in mapped gene coverage following TPA treatment. In silico analysis identified distinct EVs miRNA-gene interaction profiles, with VEGFA emerging as a recurrent predicted target. These results demonstrate that stemness-targeted modulation quantitatively reprograms EVs miRNA cargo in a cell-type-dependent manner, reshaping vesicle-mediated signaling networks in sarcoma.
339. CXCR4: A Promising Novel Strategy for Lung Cancer Treatment.
作者: Mengting Liao.;Jianmin Wu.;Tengkun Dai.;Guiyan Liu.;Jiayi Zhang.;Yiling Zhu.;Lin Xu.;Juanjuan Zhao.
来源: Biomolecules. 2026年16卷2期
Lung cancer remains a major public health challenge due to high incidence and mortality. The chemokine receptor CXCR4 and its ligand CXCL12 (SDF-1) constitute a critical axis in tumor biology, influencing tumor cell proliferation, invasion, angiogenesis, and immune evasion. Aberrant CXCR4 expression is frequently observed in lung cancer and is closely associated with adverse prognosis, enhanced metastatic potential, and therapeutic resistance. Mechanistically, CXCR4 activates signaling pathways including PI3K/AKT, MAPK/ERK, JAK/STAT, and FAK/Src, promoting epithelial-mesenchymal transition, stemness, and survival. The CXCL12/CXCR4 axis also orchestrates interactions with the tumor microenvironment, facilitating chemotaxis toward CXCL12-rich niches (e.g., bone marrow and brain) and modulating anti-tumor immunity via regulatory cells. Regulation of CXCR4 occurs at transcriptional, epigenetic, and post-transcriptional levels, with modulation by hypoxia, inflammatory signals, microRNAs, and post-translational modifications. Clinically, high CXCR4 expression correlates with metastasis, poor prognosis, and reduced response to certain therapies, underscoring its potential as a prognostic biomarker and therapeutic target. Therapeutic strategies targeting CXCR4 include small-molecule antagonists (e.g., AMD3100/plerixafor; balixafortide), anti-CXCR4 antibodies, and CXCL12 decoys, as well as imaging probes for patient selection and response monitoring (e.g., 68Ga-pentixafor PET). Preclinical and early clinical studies suggest that CXCR4 blockade can impair tumor growth, limit metastatic spread, and enhance chemotherapy and immunotherapy efficacy, although hematopoietic side effects and infection risk necessitate careful therapeutic design. This review synthesizes the molecular features, regulatory networks, and translational potential of CXCR4 in lung cancer and discusses future directions for precision therapy and biomarker-guided intervention.
340. Epigenetic Regulation of the BDNF Gene by Molybdenum in 9 to 11-Year-Old Children: A Targeted Gene DNA Methylation Study.
作者: Margaret A Voss.;Stefanie R Pilkay.;Dustin T Hill.;Lynn S Brann.;Kestutis Bendinskas.;Patrick J Parsons.;Christopher D Palmer.;Brooks B Gump.
来源: Mol Nutr Food Res. 2026年70卷5期e70426页
While essential trace minerals are known to influence DNA methylation (DNAm), molybdenum's (Mo) role in epigenetic regulation remains largely unexplored. This study examined associations between Mo status and DNAm of the brain-derived neurotrophic factor (BDNF) gene, a critical regulator of neurogenesis, in children aged 9-11 years, focusing on 107 CpG sites across BDNF and its antisense transcript (BDNF-AS).BDNF and BDNF-AS methylation was analyzed in blood samples from 72 children randomly selected from a cohort of 292 participants. Dietary Mo intake was estimated from food records, and creatinine-adjusted urinary Mo levels were quantified. Higher urinary molybdenum was significantly associated with decreased methylation at five BDNF 5'UTR sites (p<.05) and increased methylation of BDNF-AS (p = .0001), consistent with enhanced BDNF transcriptional activity. African American children exhibited lower urinary Mo excretion than European American children, suggesting greater retention, and showed cortisol-associated increases in BDNF methylation not observed in European American children.These findings demonstrate associations between molybdenum status and DNA methylation patterns at the BDNF locus in children. While functional validation through BDNF protein measurement is needed, results suggest molybdenum may influence neurotrophin gene regulation through epigenetic mechanisms, highlighting the importance of trace mineral nutrition during neurodevelopment.
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