341. Potent efficacy of an IgG-specific endoglycosidase against IgG-mediated pathologies.
作者: Diego E Sastre.;Stylianos Bournazos.;Jonathan Du.;E Josephine Boder.;Julia E Edgar.;Tala Azzam.;Nazneen Sultana.;Maros Huliciak.;Maria Flowers.;Lea Yoza.;Ting Xu.;Tatiana A Chernova.;Jeffrey V Ravetch.;Eric J Sundberg.
来源: Cell. 2024年187卷24期6994-7007.e12页
Endo-β-N-acetylglucosaminidases (ENGases) that specifically hydrolyze the Asn297-linked glycan on immunoglobulin G (IgG) antibodies, the major molecular determinant of fragment crystallizable (Fc) γ receptor (FcγR) binding, are exceedingly rare. All previously characterized IgG-specific ENGases are multi-domain proteins secreted as an immune evasion strategy by Streptococcus pyogenes strains. Here, using in silico analysis and mass spectrometry techniques, we identified a family of single-domain ENGases secreted by pathogenic corynebacterial species that exhibit strict specificity for IgG antibodies. By X-ray crystallographic and surface plasmon resonance analyses, we found that the most catalytically efficient IgG-specific ENGase family member recognizes both protein and glycan components of IgG. Employing in vivo models, we demonstrated the remarkable efficacy of this IgG-specific ENGase in mitigating numerous pathologies that rely on FcγR-mediated effector functions, including T and B lymphocyte depletion, autoimmune hemolytic anemia, and antibody-dependent enhancement of dengue disease, revealing its potential for treating and/or preventing a wide range of IgG-mediated diseases in humans.
342. A two-front nutrient supply environment fuels small intestinal physiology through differential regulation of nutrient absorption and host defense.
作者: Jian Zhang.;Ruonan Tian.;Jia Liu.;Jie Yuan.;Siwen Zhang.;Zhexu Chi.;Weiwei Yu.;Qianzhou Yu.;Zhen Wang.;Sheng Chen.;Mobai Li.;Dehang Yang.;Tianyi Hu.;Qiqi Deng.;Xiaoyang Lu.;Yidong Yang.;Rongbin Zhou.;Xue Zhang.;Wanlu Liu.;Di Wang.
来源: Cell. 2024年187卷22期6251-6271.e20页
The small intestine contains a two-front nutrient supply environment created by luminal dietary and microbial metabolites (enteral side) and systemic metabolites from the host (serosal side). Yet, it is unknown how each side contributes differentially to the small intestinal physiology. Here, we generated a comprehensive, high-resolution map of the small intestinal two-front nutrient supply environment. Using in vivo tracing of macronutrients and spatial metabolomics, we visualized the spatiotemporal dynamics and cell-type tropism in nutrient absorption and the region-specific metabolic heterogeneity within the villi. Specifically, glutamine from the enteral side fuels goblet cells to support mucus production, and the serosal side loosens the epithelial barrier by calibrating fungal metabolites. Disorganized feeding patterns, akin to the human lifestyle of skipping breakfast, increase the risk of metabolic diseases by inducing epithelial memory of lipid absorption. This study improves our understanding of how the small intestine is spatiotemporally regulated by its unique nutritional environment.
343. Light-induced targeting enables proteomics on endogenous condensates.
作者: Choongman Lee.;Andrea Quintana.;Ida Suppanz.;Alejandro Gomez-Auli.;Gerhard Mittler.;Ibrahim I Cissé.
来源: Cell. 2024年187卷25期7079-7090.e17页
Endogenous condensates with transient constituents are notoriously difficult to study with common biological assays like mass spectrometry and other proteomics profiling. Here, we report a method for light-induced targeting of endogenous condensates (LiTEC) in living cells. LiTEC combines the identification of molecular zip codes that target the endogenous condensates with optogenetics to enable controlled and reversible partitioning of an arbitrary cargo, such as enzymes commonly used in proteomics, into the condensate in a blue light-dependent manner. We demonstrate a proof of concept by combining LiTEC with proximity-based biotinylation (BioID) and uncover putative components of transcriptional condensates in mouse embryonic stem cells. Our approach opens the road to genome-wide functional studies of endogenous condensates.
345. RNA G-quadruplexes form scaffolds that promote neuropathological α-synuclein aggregation.
作者: Kazuya Matsuo.;Sefan Asamitsu.;Kohei Maeda.;Hiroyoshi Suzuki.;Kosuke Kawakubo.;Ginji Komiya.;Kenta Kudo.;Yusuke Sakai.;Karin Hori.;Susumu Ikenoshita.;Shingo Usuki.;Shiori Funahashi.;Hideki Oizumi.;Atsushi Takeda.;Yasushi Kawata.;Tomohiro Mizobata.;Norifumi Shioda.;Yasushi Yabuki.
来源: Cell. 2024年187卷24期6835-6848.e20页
Synucleinopathies, including Parkinson's disease, dementia with Lewy bodies, and multiple system atrophy, are triggered by α-synuclein aggregation, triggering progressive neurodegeneration. However, the intracellular α-synuclein aggregation mechanism remains unclear. Herein, we demonstrate that RNA G-quadruplex assembly forms scaffolds for α-synuclein aggregation, contributing to neurodegeneration. Purified α-synuclein binds RNA G-quadruplexes directly through the N terminus. RNA G-quadruplexes undergo Ca2+-induced phase separation and assembly, accelerating α-synuclein sol-gel phase transition. In α-synuclein preformed fibril-treated neurons, RNA G-quadruplex assembly comprising synaptic mRNAs co-aggregates with α-synuclein upon excess cytoplasmic Ca2+ influx, eliciting synaptic dysfunction. Forced RNA G-quadruplex assembly using an optogenetic approach evokes α-synuclein aggregation, causing neuronal dysfunction and neurodegeneration. The administration of 5-aminolevulinic acid, a protoporphyrin IX prodrug, prevents RNA G-quadruplex phase separation, thereby attenuating α-synuclein aggregation, neurodegeneration, and progressive motor deficits in α-synuclein preformed fibril-injected synucleinopathic mice. Therefore, Ca2+ influx-induced RNA G-quadruplex assembly accelerates α-synuclein phase transition and aggregation, potentially contributing to synucleinopathies.
346. A conserved fertilization complex bridges sperm and egg in vertebrates.
作者: Victoria E Deneke.;Andreas Blaha.;Yonggang Lu.;Johannes P Suwita.;Jonne M Draper.;Clara S Phan.;Karin Panser.;Alexander Schleiffer.;Laurine Jacob.;Theresa Humer.;Karel Stejskal.;Gabriela Krssakova.;Elisabeth Roitinger.;Dominik Handler.;Maki Kamoshita.;Tyler D R Vance.;Xinyin Wang.;Joachim M Surm.;Yehu Moran.;Jeffrey E Lee.;Masahito Ikawa.;Andrea Pauli.
来源: Cell. 2024年187卷25期7066-7078.e22页
Fertilization, the basis for sexual reproduction, culminates in the binding and fusion of sperm and egg. Although several proteins are known to be crucial for this process in vertebrates, the molecular mechanisms remain poorly understood. Using an AlphaFold-Multimer screen, we identified the protein Tmem81 as part of a conserved trimeric sperm complex with the essential fertilization factors Izumo1 and Spaca6. We demonstrate that Tmem81 is essential for male fertility in zebrafish and mice. In line with trimer formation, we show that Izumo1, Spaca6, and Tmem81 interact in zebrafish sperm and that the human orthologs interact in vitro. Notably, complex formation creates the binding site for the egg fertilization factor Bouncer in zebrafish. Together, our work presents a comprehensive model for fertilization across vertebrates, where a conserved sperm complex binds to divergent egg proteins-Bouncer in fish and JUNO in mammals-to mediate sperm-egg interaction.
347. PLD3 and PLD4 synthesize S,S-BMP, a key phospholipid enabling lipid degradation in lysosomes.
作者: Shubham Singh.;Ulrich E Dransfeld.;Yohannes A Ambaw.;Joshua Lopez-Scarim.;Robert V Farese.;Tobias C Walther.
来源: Cell. 2024年187卷24期6820-6834.e24页
Bis(monoacylglycero)phosphate (BMP) is an abundant lysosomal phospholipid required for degradation of lipids, particularly gangliosides. Alterations in BMP levels are associated with neurodegenerative diseases. Unlike typical glycerophospholipids, lysosomal BMP has two chiral glycerol carbons in the S (rather than the R) stereo-conformation, protecting it from lysosomal degradation. How this unusual and yet crucial S,S-stereochemistry is achieved is unknown. Here, we report that phospholipases D3 and D4 (PLD3 and PLD4) synthesize lysosomal S,S-BMP, with either enzyme catalyzing the critical glycerol stereo-inversion reaction in vitro. Deletion of PLD3 or PLD4 markedly reduced BMP levels in cells or in murine tissues where either enzyme is highly expressed (brain for PLD3; spleen for PLD4), leading to gangliosidosis and lysosomal abnormalities. PLD3 mutants associated with neurodegenerative diseases, including risk of Alzheimer's disease, diminished PLD3 catalytic activity. We conclude that PLD3/4 enzymes synthesize lysosomal S,S-BMP, a crucial lipid for maintaining brain health.
348. Brain-body physiology: Local, reflex, and central communication.
作者: Megan Sammons.;Miranda C Popescu.;Jingyi Chi.;Stephen D Liberles.;Nadine Gogolla.;Asya Rolls.
来源: Cell. 2024年187卷21期5877-5890页
Behavior is tightly synchronized with bodily physiology. Internal needs from the body drive behavior selection, while optimal behavior performance requires a coordinated physiological response. Internal state is dynamically represented by the nervous system to influence mood and emotion, and body-brain signals also direct responses to external sensory cues, enabling the organism to adapt and pursue its goals within an ever-changing environment. In this review, we examine the anatomy and function of the brain-body connection, manifested across local, reflex, and central regulation levels. We explore these hierarchical loops in the context of the immune system, specifically through the lens of immunoception, and discuss the impact of its dysregulation on human health.
349. Pioneering discovery and therapeutics at the brain-vascular-immune interface.
作者: Katerina Akassoglou.;Dimitrios Davalos.;Andrew S Mendiola.;Mark A Petersen.;Jae Kyu Ryu.;Christian Schachtrup.;Zhaoqi Yan.
来源: Cell. 2024年187卷21期5871-5876页
The brain-vascular-immune interface has emerged as a dynamic player in brain physiology and disease. We propose integrating vascular risk factors with genetic susceptibility as the nexus for the discovery of mechanisms and therapies for neuroinflammation, neurodegeneration, and neurorepair across polygenic neurologic diseases.
350. The neuroscience of mental illness: Building toward the future.
Mental illnesses arise from dysfunction in the brain. Although numerous extraneural factors influence these illnesses, ultimately, it is the science of the brain that will lead to novel therapies. Meanwhile, our understanding of this complex organ is incomplete, leading to the oft-repeated trope that neuroscience has yet to make significant contributions to the care of individuals with mental illnesses. This review seeks to counter this narrative, using specific examples of how neuroscientific advances have contributed to progress in mental health care in the past and how current achievements set the stage for further progress in the future.
351. Unraveling mechanisms of human brain evolution.
Evolutionary changes in human brain structure and function have enabled our specialized cognitive abilities. How these changes have come about genetically and functionally has remained an open question. However, new methods are providing a wealth of information about the genetic, epigenetic, and transcriptomic differences that set the human brain apart. Combined with in vitro models that allow access to developing brain tissue and the cells of our closest living relatives, the puzzle pieces are now coming together to yield a much more complete picture of what is actually unique about the human brain. The challenge now will be linking these observations and making the jump from correlation to causation. However, elegant genetic manipulations are now possible and, when combined with model systems such as organoids, will uncover a mechanistic understanding of how evolutionary changes at the genetic level have led to key differences in development and function that enable human cognition.
352. Understanding the neural basis of natural intelligence.
Understanding the neural basis of natural intelligence necessitates a paradigm shift: from strict reductionism toward embracing complexity and diversity. New tools and theories enable us to tackle this challenge, providing unprecedented access to neural dynamics and behavior across time, contexts, and species. Principles for intelligent behavior and learning in the natural world are now, more than ever, within reach.
353. Decoding the brain: From neural representations to mechanistic models.
作者: Mackenzie Weygandt Mathis.;Adriana Perez Rotondo.;Edward F Chang.;Andreas S Tolias.;Alexander Mathis.
来源: Cell. 2024年187卷21期5814-5832页
A central principle in neuroscience is that neurons within the brain act in concert to produce perception, cognition, and adaptive behavior. Neurons are organized into specialized brain areas, dedicated to different functions to varying extents, and their function relies on distributed circuits to continuously encode relevant environmental and body-state features, enabling other areas to decode (interpret) these representations for computing meaningful decisions and executing precise movements. Thus, the distributed brain can be thought of as a series of computations that act to encode and decode information. In this perspective, we detail important concepts of neural encoding and decoding and highlight the mathematical tools used to measure them, including deep learning methods. We provide case studies where decoding concepts enable foundational and translational science in motor, visual, and language processing.
354. Future views on neuroscience and AI.
作者: Ilana Witten.;Daniel L K Yamins.;Claudia Clopath.;Matthias Bethge.;Yi Zeng.;Ann Kennedy.;Abeba Birhane.;Doris Tsao.;Been Kim.;Ila Fiete.
来源: Cell. 2024年187卷21期5809-5813页
The relationship between neuroscience and artificial intelligence (AI) has evolved rapidly over the past decade. These two areas of study influence and stimulate each other. We invited experts to share their perspectives on this exciting intersection, focusing on current achievements, unsolved questions, and future directions.
355. In search of problems.
With early training in physics, my career was marked by continuous learning and searching for interesting problems in biology. Here, I recount some key events that influenced my choices of research topics. The diversity of topics could be attributed to my own lack of a particular focus and the interests of students and postdocs who happened to join my laboratory. My scientific and educational ventures led to my extensive involvement in Chinese neuroscience and various studies in non-human primates.
356. The expanding world of neuroscience.
Understanding the brain fascinates and intrigues many across the world. In this 50th Anniversary "Focus on Neuroscience" issue, we present Leading Edge content reflecting on the progress of the field, highlighting emerging topics, and paving the way toward many more years of exciting neuroscience research.
357. IRE1α silences dsRNA to prevent taxane-induced pyroptosis in triple-negative breast cancer.
作者: Longyong Xu.;Fanglue Peng.;Qin Luo.;Yao Ding.;Fei Yuan.;Liting Zheng.;Wei He.;Sophie S Zhang.;Xin Fu.;Jin Liu.;Ayse Sena Mutlu.;Shuyue Wang.;Ralf Bernd Nehring.;Xingyu Li.;Qianzi Tang.;Catherine Li.;Xiangdong Lv.;Lacey E Dobrolecki.;Weijie Zhang.;Dong Han.;Na Zhao.;Eric Jaehnig.;Jingyi Wang.;Weiche Wu.;Davis A Graham.;Yumei Li.;Rui Chen.;Weiyi Peng.;Yiwen Chen.;Andre Catic.;Zhibin Zhang.;Bing Zhang.;Anthony M Mustoe.;Albert C Koong.;George Miles.;Michael T Lewis.;Meng C Wang.;Susan M Rosenberg.;Bert W O'Malley.;Thomas F Westbrook.;Han Xu.;Xiang H-F Zhang.;C Kent Osborne.;Jin Billy Li.;Matthew J Ellis.;Mothaffar F Rimawi.;Jeffrey M Rosen.;Xi Chen.
来源: Cell. 2024年187卷25期7248-7266.e34页
Chemotherapy is often combined with immune checkpoint inhibitor (ICIs) to enhance immunotherapy responses. Despite the approval of chemo-immunotherapy in multiple human cancers, many immunologically cold tumors remain unresponsive. The mechanisms determining the immunogenicity of chemotherapy are elusive. Here, we identify the ER stress sensor IRE1α as a critical checkpoint that restricts the immunostimulatory effects of taxane chemotherapy and prevents the innate immune recognition of immunologically cold triple-negative breast cancer (TNBC). IRE1α RNase silences taxane-induced double-stranded RNA (dsRNA) through regulated IRE1-dependent decay (RIDD) to prevent NLRP3 inflammasome-dependent pyroptosis. Inhibition of IRE1α in Trp53-/- TNBC allows taxane to induce extensive dsRNAs that are sensed by ZBP1, which in turn activates NLRP3-GSDMD-mediated pyroptosis. Consequently, IRE1α RNase inhibitor plus taxane converts PD-L1-negative, ICI-unresponsive TNBC tumors into PD-L1high immunogenic tumors that are hyper-sensitive to ICI. We reveal IRE1α as a cancer cell defense mechanism that prevents taxane-induced danger signal accumulation and pyroptotic cell death.
358. Multiscale drug screening for cardiac fibrosis identifies MD2 as a therapeutic target.
作者: Hao Zhang.;Phung N Thai.;Rabindra V Shivnaraine.;Lu Ren.;Xuekun Wu.;Dirk H Siepe.;Yu Liu.;Chengyi Tu.;Hye Sook Shin.;Arianne Caudal.;Souhrid Mukherjee.;Jeremy Leitz.;Wilson Tan Lek Wen.;Wenqiang Liu.;Wenjuan Zhu.;Nipavan Chiamvimonvat.;Joseph C Wu.
来源: Cell. 2024年187卷25期7143-7163.e22页
Cardiac fibrosis impairs cardiac function, but no effective clinical therapies exist. To address this unmet need, we employed a high-throughput screening for antifibrotic compounds using human induced pluripotent stem cell (iPSC)-derived cardiac fibroblasts (CFs). Counter-screening of the initial candidates using iPSC-derived cardiomyocytes and iPSC-derived endothelial cells excluded hits with cardiotoxicity. This screening process identified artesunate as the lead compound. Following profibrotic stimuli, artesunate inhibited proliferation, migration, and contraction in human primary CFs, reduced collagen deposition, and improved contractile function in 3D-engineered heart tissues. Artesunate also attenuated cardiac fibrosis and improved cardiac function in heart failure mouse models. Mechanistically, artesunate targeted myeloid differentiation factor 2 (MD2) and inhibited MD2/Toll-like receptor 4 (TLR4) signaling pathway, alleviating fibrotic gene expression in CFs. Our study leverages multiscale drug screening that integrates a human iPSC platform, tissue engineering, animal models, in silico simulations, and multiomics to identify MD2 as a therapeutic target for cardiac fibrosis.
359. The multi-stage plasticity in the aggression circuit underlying the winner effect.
作者: Rongzhen Yan.;Dongyu Wei.;Avni Varshneya.;Lynn Shan.;Bing Dai.;Hector J Asencio.;Aishwarya Gollamudi.;Dayu Lin.
来源: Cell. 2024年187卷24期6785-6803.e18页
Winning increases the readiness to attack and the probability of winning, a widespread phenomenon known as the "winner effect." Here, we reveal a transition from target-specific to generalized aggression enhancement over 10 days of winning in male mice. This behavioral change is supported by three causally linked plasticity events in the ventrolateral part of the ventromedial hypothalamus (VMHvl), a critical node for aggression. Over 10 days of winning, VMHvl cells experience monotonic potentiation of long-range excitatory inputs, transient local connectivity strengthening, and a delayed excitability increase. Optogenetically coactivating the posterior amygdala (PA) terminals and VMHvl cells potentiates the PA-VMHvl pathway and triggers the same cascade of plasticity events observed during repeated winning. Optogenetically blocking PA-VMHvl synaptic potentiation eliminates all winning-induced plasticity. These results reveal the complex Hebbian synaptic and excitability plasticity in the aggression circuit during winning, ultimately leading to increased "aggressiveness" in repeated winners.
360. Structural basis of respiratory complex adaptation to cold temperatures.
作者: Young-Cheul Shin.;Pedro Latorre-Muro.;Amina Djurabekova.;Oleksii Zdorevskyi.;Christopher F Bennett.;Nils Burger.;Kangkang Song.;Chen Xu.;Joao A Paulo.;Steven P Gygi.;Vivek Sharma.;Maofu Liao.;Pere Puigserver.
来源: Cell. 2024年187卷23期6584-6598.e17页
In response to cold, mammals activate brown fat for respiratory-dependent thermogenesis reliant on the electron transport chain. Yet, the structural basis of respiratory complex adaptation upon cold exposure remains elusive. Herein, we combined thermoregulatory physiology and cryoelectron microscopy (cryo-EM) to study endogenous respiratory supercomplexes from mice exposed to different temperatures. A cold-induced conformation of CI:III2 (termed type 2) supercomplex was identified with a ∼25° rotation of CIII2 around its inter-dimer axis, shortening inter-complex Q exchange space, and exhibiting catalytic states that favor electron transfer. Large-scale supercomplex simulations in mitochondrial membranes reveal how lipid-protein arrangements stabilize type 2 complexes to enhance catalytic activity. Together, our cryo-EM studies, multiscale simulations, and biochemical analyses unveil the thermoregulatory mechanisms and dynamics of increased respiratory capacity in brown fat at the structural and energetic level.
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